WebAug 20, 2014 · Meaning of the read group fields required by GATK. ID = Read group identifier. This tag identifies which read group each read belongs to, so each read group's ID must be unique. It is referenced both in the read group definition line in the file header … WebApr 19, 2013 · here are the commands that i used in adding the read group and merge the bam files. -rh rgmt.txt - genome_110506_SN13.bam genome_110506_SN132.bam genome_110506_SN132_A.bam > newmut.bam. and here is the GATK command i used for the somaticindeldetector.
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WebJun 12, 2014 · BWA and GATK: read groups. "My understanding is that a read group means, roughly, "a set of reads that were all the product of a single sequencing run on one lane". If you have multiplexed samples in a single lane, you will get multiple samples in a single read group. If you sequenced the same sample in several lanes, you will have multiple ... WebA group identifier, often abbreviated to GID, is a numeric value used to represent a specific group. The range of values for a GID varies amongst different systems; at the very least, a … WebAug 2, 2024 · Identifiers that contain keywords are legal. For example, Pint is a legal identifier, even though it contains int, which is a keyword. Use of two sequential underscore characters ( __) in an identifier, or a single leading underscore followed by a capital letter, is reserved for C++ implementations in all scopes. You should avoid using one ... camping and rv show toronto